Q1: All of my opponent's Digimon were given -6000 DP from this card's On Play When Digivolving effect. If an opponent's Digimon with 6000 DP or less and an On Play effect is played during the same turn, can that Digimon's On Play effect activate ?

No, it can't. A rule check will occur before the played Digimon's On Play effect activates. A Digimon with 0 DP will be deleted upon a rule check, therefore the effect can't activate because the played Digimon is deleted and the card leaves its current area before its effect that's pending activation activates.

Q2: What order do a Security effect, "when ... performs a security check" effect, and "when a card is removed from ... security stack" effect activate when they trigger simultaneously upon a security check?

Security effects take precedence for activation. Upon a security check, a Security effect will immediately activate without pending activation. For other triggered effects, the turn player activates their effects first.

Q3: After gaining Security Attack +1 from this card's All Turns effect during my opponent's turn, can I gain Security Attack +1 again from this card's All Turns effect during my next turn?

Yes, you can.

Q4: When this card is used to check my opponent's security stack and it would be deleted in battle with a Security Digimon that has 12000 DP or more, I used this card's Barrier to trash a security card and prevent the deletion. At such times, if I gain Security Attack +1 from this card's All Turns effect, can I perform another security check on my opponent?

Yes, you can perform an additional security check.